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Guess biological entity (BE), database source and organism of a vector of identifiers.

Source: R/guessIdScope.R
guessIdScope.Rd

Guess biological entity (BE), database source and organism of a vector of identifiers.

Usage

guessIdScope(ids, be, source, organism, tcLim = 100)

guessIdOrigin(...)

Arguments

ids

a character vector of identifiers

be

one BE or "Probe". Guessed if not provided

source

the BE ID database or "Symbol" if BE or the probe platform if Probe. Guessed if not provided

organism

organism name. Guessed if not provided

tcLim

number of identifiers to check to guess origin for the whole set. Inf ==> no limit.

...

params for guessIdScope

Value

A list (NULL if no match):

  • be: a character vector of length 1 providing the best BE guess (NA if inconsistent with user input: be, source or organism)

  • source: a character vector of length 1 providing the best source guess (NA if inconsistent with user input: be, source or organism)

  • *organism$: a character vector of length 1 providing the best organism guess (NA if inconsistent with user input: be, source or organism)

The "details" attribute (`attr(x, "details")“) is a data frame providing numbers supporting the guess

Functions

  • guessIdOrigin(): Deprecated version of guessIdScope

Examples

if (FALSE) { # \dontrun{
guessIdScope(ids=c("10", "100"))
} # }