Get names of Biological Entity identifiers — getBeIdNames • BED

Get names of Biological Entity identifiers

Usage

getBeIdNames(ids, be, source, organism, limForCache = 4000, ...)

Arguments

ids: list of identifiers
be: one BE. Guessed if not provided
source: the BE ID database. Guessed if not provided
organism: organism name. Guessed if not provided
limForCache: if there are more ids than limForCache results are collected for all IDs (beyond provided ids) and cached for futur queries. If not, results are collected only for provided ids and not cached.
...: params for the getBeIdNameTable function

Value

a data.frame mapping BE IDs and names with the following fields:

id: the BE ID
name: the corresponding name
direct: true if the name is directly related to the BE ID
entity: (optional) the technical ID of to BE

See also

getBeIdNameTable, getBeIdSymbols

Examples

if (FALSE) {
getBeIdNames(
   ids=c("10", "100"),
   be="Gene",
   source="EntrezGene",
   organism="human"
)
}