Focus a BE related object on a specific identifier (BEID) scope

Focus a BE related object on a specific identifier (BEID) scope

Usage

focusOnScope(
  x,
  be,
  source,
  organism,
  scope,
  force,
  restricted,
  prefFilter,
  ...
)

Arguments

x

an object representing a collection of BEID (e.g. BEIDList)

be

the type of biological entity to focus on. Used if is.null(scope)

source

the source of BEID to focus on. Used if is.null(scope)

organism

the organism of BEID to focus on. Used if is.null(scope)

scope

a list with the following element:

• be

• source

• organism

force

if TRUE the conversion is done even between identical scopes (default: FALSE)

restricted

if TRUE (default) the BEID are limited to current version of the source

prefFilter

if TRUE (default) the BEID are limited to prefered identifiers when they exist

...

method specific parameters for BEID conversion

Value

Depends on the class of x