Feeding BED: Dump and preprocess flat dat files fro Uniprot
Source:R/dumpUniprotDb.R
dumpUniprotDb.Rd
Not exported to avoid unintended modifications of the DB.
Usage
dumpUniprotDb(
taxOfInt,
release,
ddir,
ftp = "ftp://ftp.expasy.org/databases/uniprot",
env = parent.frame(n = 1)
)
Arguments
- taxOfInt
the organism of interest. Only human ("9606"), mouse ("10090") and rat ("10116") are supported
- release
the release of interest (check if already downloaded)
- ddir
path to the directory where the data should be saved
- ftp
location of the ftp site
- env
the R environment in which to load the tables when built