Not exported to avoid unintended modifications of the DB.
Usage
dumpNcbiDb(
taxOfInt,
reDumpThr,
ddir,
toLoad = c("gene_info", "gene2ensembl", "gene_group", "gene_orthologs", "gene_history",
"gene2refseq"),
env = parent.frame(n = 1),
curDate
)Arguments
- taxOfInt
the organism to download (e.g. "9606").
- reDumpThr
time difference threshold between 2 downloads
- ddir
path to the directory where the data should be saved
- toLoad
the list of tables to load
- env
the R environment in which to load the tables when downloaded
- curDate
current date as given by Sys.Date