Not exported to avoid unintended modifications of the DB.
Usage
dumpEnsCore(
organism,
release,
gv,
ddir,
toDump = c("attrib_type", "gene_attrib", "transcript", "external_db", "gene",
"translation", "external_synonym", "object_xref", "xref", "stable_id_event"),
env = parent.frame(n = 1)
)
Arguments
- organism
the organism to download (e.g. "Homo sapiens").
- release
Ensembl release (e.g. "83")
- gv
version of the genome (e.g. "38")
- ddir
path to the directory where the data should be saved
- toDump
the list of tables to download
- env
the R environment in which to load the tables when downloaded