Add BE ID conversion to a data frame
Arguments
- df
the data.frame to be converted
- idCol
the column in which ID to convert are. If NULL (default) the row names are taken.
- entity
if TRUE returns BE instead of BEID (default: FALSE). BE CAREFUL, THIS INTERNAL ID IS NOT STABLE AND CANNOT BE USED AS A REFERENCE. This internal identifier is useful to avoid biases related to identifier redundancy. See ../doc/BED.html#3_managing_identifiers
- ...
params for the convBeIds function
Value
A data.frame with converted IDs.
Scope ("be", "source", "organism" and "entity" (see Arguments))
is provided as a named list
in the "scope" attributes: attr(x, "scope")
.
Examples
if (FALSE) {
toConv <- data.frame(a=1:2, b=3:4)
rownames(toConv) <- c("10", "100")
convDfBeIds(
df=toConv,
from="Gene",
from.source="EntrezGene",
from.org="human",
to.source="Ens_gene"
)
}