Read a data model from JSON
Examples
## Read the model ----
hpo_model <- read_json_data_model(
system.file("examples/HPO-model.json", package="ReDaMoR")
)
## Confront to data ----
confrontation_report <- confront_data(
hpo_model,
path=list.files(
system.file("examples/HPO-subset", package="ReDaMoR"),
full.names=TRUE
),
returnData=TRUE
)
#> Processing "HPO_hp" (table 1 / 9)
#> Processing "HPO_altId" (table 2 / 9)
#> Processing "HPO_sourceFiles" (table 3 / 9)
#> Processing "HPO_diseases" (table 4 / 9)
#> Processing "HPO_diseaseHP" (table 5 / 9)
#> Processing "HPO_diseaseSynonyms" (table 6 / 9)
#> Processing "HPO_parents" (table 7 / 9)
#> Processing "HPO_descendants" (table 8 / 9)
#> Processing "HPO_synonyms" (table 9 / 9)
#> Model
#> SUCCESS
#>
#> Check configuration
#> - Optional checks: unique, not nullable, foreign keys
#> - Maximum number of records: Inf
#>
#> HPO_hp
#> SUCCESS
#> Field issues or warnings
#> - description: SUCCESS Missing values 117/500 = 23%
#>